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  5. MA_10431478g0010

MA_10431478g0010


Description : Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana (sp|q9fkc3|pp424_arath : 483.0)


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10431478g0010

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.09 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
Len_g30782 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.02 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 427 475
IPR002885 Pentatricopeptide_repeat 184 228
IPR002885 Pentatricopeptide_repeat 359 404
IPR002885 Pentatricopeptide_repeat 326 352
IPR002885 Pentatricopeptide_repeat 149 178
IPR002885 Pentatricopeptide_repeat 239 302
No external refs found!