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  5. MA_10431382g0020

MA_10431382g0020 (SDE1, RDR6, SGS2)


Aliases : SDE1, RDR6, SGS2

Description : RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana (sp|q9sg02|rdr6_arath : 472.0)


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10431382g0020
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Aev_g18083 SMD1, RDR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G095000.1 ATRDRP1, RDR1,... not classified & original description: pacid=50572384... 0.02 OrthoFinder output from all 47 species
Dac_g08042 ATRDRP1, RDR1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g23245 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011643001 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01035851001 SDE1, RDR6, SGS2 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.02 OrthoFinder output from all 47 species
Gb_12327 SDE1, RDR6, SGS2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_28426 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e007872_P002 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 409 558
IPR007855 RNA-dep_RNA_pol_euk-typ 561 717
No external refs found!