MA_10430150g0010

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana (sp|q93y16|deah4_arath : 171.0)

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10430150g0010

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00005p00122600	evm_27.TU.AmTr_v1...	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00021p00166450	evm_27.TU.AmTr_v1...	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
AMTR_s00090p00083520	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Aev_g27800	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g38553	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene28720.t1	Aspi01Gene28720	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000842.2	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.01	OrthoFinder output from all 47 species
Cre07.g329150	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Gb_30670	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	OrthoFinder output from all 47 species
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	OrthoFinder output from all 47 species
Sam_g25079	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc05g015040.4.1	Solyc05g015040	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Solyc09g097820.3.1	Solyc09g097820	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Zm00001e028404_P001	Zm00001e028404	RNA helicase (Prp22)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	14	131

External Links

No external refs found!

MA_10430150g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation