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MA_10429565g0010


Description : Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica (sp|q5jl96|zfp34_orysj : 348.0)


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429565g0010
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT5G18650 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 OrthoFinder output from all 47 species
AT5G22920 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 OrthoFinder output from all 47 species
GSVIVT01031467001 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01033674001 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os03g22680.1 LOC_Os03g22680 E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os10g31850.1 LOC_Os10g31850 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g02904 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Smo78412 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e004657_P008 Zm00001e004657 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR039512 RCHY1_zinc-ribbon 223 281
IPR027370 Znf-RING_euk 176 216
IPR008913 Znf_CHY 40 121
No external refs found!