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  5. MA_10429288g0010

MA_10429288g0010 (EXPA16, ATHEXP ALPHA...)


Aliases : EXPA16, ATHEXP ALPHA 1.7, ATEXP16, EXP16, ATEXPA16

Description : alpha-class expansin


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10429288g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.01 OrthoFinder output from all 47 species
AT2G40610 EXPA8, ATHEXP... expansin A8 0.01 OrthoFinder output from all 47 species
AT3G29030 EXP5, ATHEXP... expansin A5 0.02 OrthoFinder output from all 47 species
GSVIVT01005917001 ATHEXP BETA 3.1,... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01013208001 ATHEXP BETA 3.1,... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01028474001 ATEXPA25,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01030192001 No alias Expansin-A2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Gb_01500 EXPA8, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Gb_01502 EXPA8, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Gb_01505 EXPA8, ATHEXP... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Gb_06127 EXP15, ATEXPA15,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Gb_10702 ATHEXP BETA 3.1,... beta-like-class expansin 0.01 OrthoFinder output from all 47 species
Gb_16008 EXP15, ATEXPA15,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Gb_24808 ATEXLA1, EXPL1,... alpha-like-class expansin 0.01 OrthoFinder output from all 47 species
LOC_Os01g14660.1 ATHEXP ALPHA... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os03g06010.1 ATEXPA11, ATHEXP... alpha-class expansin 0.03 OrthoFinder output from all 47 species
LOC_Os04g15840.1 LOC_Os04g15840 alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os04g46650.1 ATHEXP BETA 1.4,... Expansin-B5 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os10g30340.1 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g39110.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Lfl_g27479 EXPB3, ATEXPB3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_103404g0010 EXPA16, ATHEXP... alpha-class expansin 0.07 OrthoFinder output from all 47 species
MA_40671g0010 ATEXPA3, EXP3,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Solyc01g090810.4.1 ATHEXP BETA 1.4,... Putative expansin-B2 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Solyc01g090820.2.1 ATHEXP BETA 1.4,... Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
Solyc01g112000.4.1 ATEXLA1, EXPL1,... alpha-like-class expansin 0.01 OrthoFinder output from all 47 species
Solyc08g077900.3.1 ATHEXP BETA 3.1,... beta-like-class expansin 0.01 OrthoFinder output from all 47 species
Solyc08g077910.3.1 ATHEXP BETA 3.1,... beta-like-class expansin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 167 244
IPR009009 RlpA-like_DPBB 69 156
No external refs found!