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  5. MA_10428887g0010

MA_10428887g0010


Description : transcription factor (LIM)


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10428887g0010
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16342.t1 Aspi01Gene16342 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62649.t1 WLIM1, Aspi01Gene62649 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Len_g22091 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25515 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo229974 No alias RNA biosynthesis.transcriptional activation.LIM... 0.03 OrthoFinder output from all 47 species
Solyc01g094320.3.1 Solyc01g094320 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc08g007940.4.1 Solyc08g007940 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Solyc08g080740.3.1 Solyc08g080740 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc10g017520.3.1 Solyc10g017520 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Solyc11g044740.2.1 WLIM1, Solyc11g044740 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 64
IPR001781 Znf_LIM 110 165
No external refs found!