- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana (sp|q8ry59|rcd1_arath : 86.3)
Gene families : OG0000733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000733_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10426389g0010 | |
| Cluster | HCCA: Cluster_245 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G47720 | SRO4 | similar to RCD one 4 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g087899 | AtRCD1, RCD1,... | organellar-signalling mediator *(RCD1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene39617.t1 | AtRCD1, RCD1,... | organellar-signalling mediator *(RCD1) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g02762 | AtRCD1, RCD1,... | organellar-signalling mediator *(RCD1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03940 | SRO2 | organellar-signalling mediator *(RCD1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g03660 | AtRCD1, RCD1,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g12578 | AtRCD1, RCD1,... | organellar-signalling mediator *(RCD1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g31243 | SRO1 | organellar-signalling mediator *(RCD1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29371 | No alias | organellar-signalling mediator *(RCD1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g12815 | AtRCD1, RCD1,... | organellar-signalling mediator *(RCD1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e012999_P001 | AtRCD1, RCD1,... | Inactive poly [ADP-ribose] polymerase RCD1... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e038639_P002 | SRO2, Zm00001e038639 | Probable inactive poly [ADP-ribose] polymerase SRO2... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016763 | pentosyltransferase activity | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| MF | GO:0050997 | quaternary ammonium group binding | IEP | HCCA |
| MF | GO:0051287 | NAD binding | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| MF | GO:1901681 | sulfur compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |