MA_10425930g0020

Description : DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana (sp|f4hyj7|dexh3_arath : 270.0)

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10425930g0020
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre03.g171650	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Ehy_g15250	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022608001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Msp_g48089	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43492	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g10916	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g09359	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15305	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004608_P001	Zm00001e004608	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	23	167

External Links

No external refs found!