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Aliases : PUB25
Description : U-box domain-containing protein 25 OS=Arabidopsis thaliana (sp|q9lt79|pub25_arath : 99.4)
Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10425865g0010 | |
| Cluster | HCCA: Cluster_108 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00257160 | PUB26,... | U-box domain-containing protein 25 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| AT2G35930 | PUB23 | plant U-box 23 | 0.05 | OrthoFinder output from all 47 species | |
| AT3G02840 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G11840 | PUB24 | plant U-box 24 | 0.04 | OrthoFinder output from all 47 species | |
| AT3G19380 | PUB25 | plant U-box 25 | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g003285 | PUB25 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g014414 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g077175 | PUB26 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aev_g02169 | PUB23 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g18167 | PUB26 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g37454 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06990 | PUB23 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g10929 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g11423 | PUB15 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g23185 | CMPG1, ATCMPG1 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Als_g62359 | PUB26 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene07828.t1 | PUB26, Aspi01Gene07828 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene33499.t1 | PUB25, Aspi01Gene33499 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0084.g038964 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g27489 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g78214 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.10G007700.1 | PUB23, Ceric.10G007700 | not classified & original description: pacid=50612519... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.21G081600.1 | PUB26, Ceric.21G081600 | U-Box-group-III E3 ubiquitin ligase & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g11691 | PUB26 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g18954 | PUB25 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03660 | PUB23 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g11880 | CMPG1, ATCMPG1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g16036 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_02627 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_02629 | No alias | U-box domain-containing protein 26 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_16227 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_16228 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_17119 | PUB22 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_26429 | PUB26 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.11 | OrthoFinder output from all 47 species | |
| Gb_33334 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g33680.1 | CMPG2, ATCMPG2,... | U-box domain-containing protein 29 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g13010.1 | LOC_Os03g13010 | U-box domain-containing protein 75 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g01213 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432981g0010 | PUB22 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| MA_7928010g0010 | PUB23 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| MA_95662g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_95662g0020 | PUB25 | U-box domain-containing protein 27 OS=Arabidopsis... | 0.08 | OrthoFinder output from all 47 species | |
| Nbi_g06628 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g15868 | PUB23 | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g33878 | PUB26 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g42463 | PUB23 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g47223 | No alias | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g12004 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pp3c22_7680V3.1 | Pp3c22_7680 | CYS, MET, PRO, and GLY protein 2 | 0.01 | OrthoFinder output from all 47 species | |
| Pp3c24_16470V3.1 | ATPUB17, PUB17,... | RING/U-box superfamily protein with ARM repeat domain | 0.01 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0058.g014903 | PUB26 | not classified & original description: CDS=1-1419 | 0.03 | OrthoFinder output from all 47 species | |
| Smo403954 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Smo416356 | PUB26 | U-box domain-containing protein 30 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Smo426053 | PUB26 | U-box domain-containing protein 26 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g005160.4.1 | Solyc01g005160 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g007000.4.1 | PUB22, Solyc01g007000 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g007010.2.1 | PUB22, Solyc01g007010 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g007020.4.1 | PUB23, Solyc01g007020 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g007030.3.1 | PUB22, Solyc01g007030 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g007040.4.1 | PUB22, Solyc01g007040 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g107980.3.1 | PUB26, Solyc01g107980 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g056500.1.1 | PUB26, Solyc05g056500 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc11g006030.1.1 | Solyc11g006030 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g068920.1.1 | PUB23, Solyc11g068920 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g068940.1.1 | PUB24, Solyc11g068940 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g00706 | PUB23 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g03410 | PUB26 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g47017 | PUB23 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g06727 | PUB26 | U-Box-group-III E3 ubiquiTin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e002598_P001 | Zm00001e002598 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e036030_P001 | Zm00001e036030 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| MF | GO:0043531 | ADP binding | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |