1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_103976g0010

MA_103976g0010 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : U-box domain-containing protein 17 OS=Arabidopsis thaliana (sp|q9c7r6|pub17_arath : 358.0)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_103976g0010

Target Alias Description ECC score Gene Family Method Actions
AT3G07360 PUB9, ATPUB9 plant U-box 9 0.06 OrthoFinder output from all 47 species
Adi_g059681 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06113 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07750 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19819 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g03673 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Ore_g15817 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g28799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07479 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08627 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14332 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 167 238
IPR000225 Armadillo 301 338
No external refs found!