MA_102992g0010 (CHR17)

Aliases : CHR17

Description : Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica (sp|q7g8y3|isw2_orysj : 372.0)

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_102992g0010

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00058700	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
AMTR_s00111p00031560	No alias	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
AT3G06400	CHR11	chromatin-remodeling protein 11	0.03	OrthoFinder output from all 47 species
Adi_g104730	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107421	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04898	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g13876	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Aob_g18378	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Ceric.19G069200.1	CHR11, Ceric.19G069200	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Dcu_g02069	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Dcu_g19159	CHR11	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Dde_g15247	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ehy_g18387	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Gb_15026	No alias	chromatin remodeling factor (Alc)	0.03	OrthoFinder output from all 47 species
LOC_Os03g51230.2	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.03	OrthoFinder output from all 47 species
Lfl_g02374	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g13206	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g12701	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16130	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25685	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Ppi_g05325	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	OrthoFinder output from all 47 species
Ppi_g32094	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008525	CHR11	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Sam_g50989	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo102612	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Smo110395	CHR01, CHR1,...	Chromatin organisation.DNA methylation.RNA-independent...	0.03	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc12g099910.2.1	CHR5, Solyc12g099910	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	OrthoFinder output from all 47 species
Spa_g30961	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Zm00001e005517_P002	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015195	SLIDE	120	230

External Links

No external refs found!

MA_102992g0010 (CHR17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation