LOC_Os05g51150 (Os05g0589200)


Aliases : Os05g0589200

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. RNApolymerase sigma-subunit C (SIGC)


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os05g51150
Cluster HCCA cluster: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.03 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.03 Gene family
Zm00001d039181 GRMZM5G830932 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 330 388
IPR007624 RNA_pol_sigma70_r3 404 478
IPR007630 RNA_pol_sigma70_r4 491 544
No external refs found!