LOC_Os05g49920 (Os05g0574800)

Aliases : Os05g0574800

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis. EARLY CHLOROPLAST BIOGENESIS2 (ECB2)

Gene families : OG_01_0008957 (Gene family) Phylogenetic Tree(s): OG0008957_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os05g49920
Cluster HCCA cluster: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 Gene family
GSVIVT01017209001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
MA_27726g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc03g119950.1.1 Solyc03g119950.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family
Zm00001d039096 GRMZM2G455587 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.14 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 738 858
IPR002885 Pentatricopeptide_repeat 362 409
IPR002885 Pentatricopeptide_repeat 563 611
IPR002885 Pentatricopeptide_repeat 161 207
IPR002885 Pentatricopeptide_repeat 466 492
IPR002885 Pentatricopeptide_repeat 639 662
IPR002885 Pentatricopeptide_repeat 264 292
IPR002885 Pentatricopeptide_repeat 437 464
IPR002885 Pentatricopeptide_repeat 235 258
No external refs found!