LOC_Os05g48870 (Os05g0563400)


Aliases : Os05g0563400

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os05g48870
Cluster HCCA cluster: Cluster_316

Target Alias Description ECC score Gene Family Method Actions
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 Gene family
AT1G30330 ARF6 auxin response factor 6 0.03 Gene family
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.04 Gene family
MA_169311g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Smo117217 PACid_15403898 No description available 0.02 Gene family
Solyc07g016180.3.1 Solyc07g016180.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d014507 GRMZM2G013663 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d036593 GRMZM2G089640 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d039006 GRMZM2G030710 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 268 348
IPR003340 B3_DNA-bd 142 243
No external refs found!