Pp3s62_90V3.1 (Pp3s62_90)

Aliases : Pp3s62_90

Description : PIF1 helicase

Gene families : OG0000992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000992_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3s62_90V3.1

Target	Alias	Description	ECC score	Gene Family Method
Ala_g03402	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene05554.t1	Aspi01Gene05554	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene42994.t1	Aspi01Gene42994	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene54891.t1	SYP125,...	Qa-type SYP1-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Aspi01Gene59462.t1	Aspi01Gene59462	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g22507	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os10g24940.1	LOC_Os10g24940	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
LOC_Os12g32690.1	LOC_Os12g32690	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Pp3c13_15770V3.1	Pp3c13_15770	PIF1 helicase	0.02	OrthoFinder output from all 47 species
Pp3c14_26730V3.1	Pp3c14_26730	No annotation	0.03	OrthoFinder output from all 47 species
Pp3c15_9490V3.1	Pp3c15_9490	PIF1 helicase	0.03	OrthoFinder output from all 47 species
Pp3c15_9500V3.1	Pp3c15_9500	No annotation	0.04	OrthoFinder output from all 47 species
Pp3c17_18610V3.1	Pp3c17_18610	PIF1 helicase	0.03	OrthoFinder output from all 47 species
Pp3c17_6950V3.1	Pp3c17_6950	No annotation	0.03	OrthoFinder output from all 47 species
Pp3c18_20670V3.1	Pp3c18_20670	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c22_19090V3.1	Pp3c22_19090	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c23_11220V3.1	Pp3c23_11220	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c23_8030V3.1	Pp3c23_8030	PIF1 helicase	0.04	OrthoFinder output from all 47 species
Pp3c7_6800V3.1	Pp3c7_6800	No annotation	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	439	547

External Links

No external refs found!

Pp3s62_90V3.1 (Pp3s62_90)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation