1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c9_12661V3.1

Pp3c9_12661V3.1 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, Pp3c9_12661

Description : nuclear RNA polymerase A1


Gene families : OG0013869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013869_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_12661V3.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11520V3.1 NRPC1, Pp3c10_11520 nuclear RNA polymerase A1 0.02 OrthoFinder output from all 47 species
Pp3c11_17080V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Pp3c3_29710V3.1 NRPC1, Pp3c3_29710 RNA polymerase II large subunit 0.04 OrthoFinder output from all 47 species
Pp3c9_17770V3.1 NRPC1, Pp3c9_17770 nuclear RNA polymerase C1 0.04 OrthoFinder output from all 47 species
Pp3c9_17780V3.1 NRPC1, Pp3c9_17780 nuclear RNA polymerase C1 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 20 343
No external refs found!