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  5. Pp3c8_4620V3.1

Pp3c8_4620V3.1 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, Pp3c8_4620

Description : RNA polymerase II large subunit


Gene families : OG0011134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_4620V3.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_231V3.1 Pp3c14_231 nuclear RNA polymerase D1A 0.03 OrthoFinder output from all 47 species
Pp3c14_4000V3.1 Pp3c14_4000 RNA polymerase II large subunit 0.06 OrthoFinder output from all 47 species
Pp3c14_4010V3.1 Pp3c14_4010 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Pp3c19_15140V3.1 Pp3c19_15140 RNA polymerase II large subunit 0.02 OrthoFinder output from all 47 species
Pp3c1_270V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Pp3c21_8550V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.01 OrthoFinder output from all 47 species
Pp3c24_10300V3.1 Pp3c24_10300 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Pp3c4_24940V3.1 Pp3c4_24940 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Pp3c6_15700V3.1 Pp3c6_15700 nuclear RNA polymerase C1 0.03 OrthoFinder output from all 47 species
Pp3c9_17810V3.1 RNA_POL_II_LSRNA_... nuclear RNA polymerase C1 0.02 OrthoFinder output from all 47 species
Pp3s67_110V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 192 262
No external refs found!