1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c7_25950V3.1

Pp3c7_25950V3.1 (CDC48A, CDC48,...)


Aliases : CDC48A, CDC48, ATCDC48, Pp3c7_25950

Description : ATPase, AAA-type, CDC48 protein


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_25950V3.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27195.t1 emb1354, CDC48C,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27196.t1 emb1354, CDC48C,... platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10879 No alias platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c12_11370V3.1 Pp3c12_11370 AAA-type ATPase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g08291 emb1354, CDC48C not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 189 227
IPR003959 ATPase_AAA_core 48 166
No external refs found!