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  5. Pp3c6_29730V3.1

Pp3c6_29730V3.1 (Pp3c6_29730)


Aliases : Pp3c6_29730

Description : Transport protein particle (TRAPP) component


Gene families : OG0004388 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004388_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_29730V3.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT5G54750 No alias Transport protein particle (TRAPP) component 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001262 No alias component *(BET3) of TRAPP-I/II/III complex-shared... 0.01 OrthoFinder output from all 47 species
Cre03.g145607 No alias Vesicle trafficking.target membrane tethering.TRAPP... 0.02 OrthoFinder output from all 47 species
Dcu_g04408 No alias component *(BET3) of TRAPP-I/II/III complex-shared... 0.02 OrthoFinder output from all 47 species
Len_g03593 No alias component *(BET3) of TRAPP-I/II/III complex-shared... 0.02 OrthoFinder output from all 47 species
Lfl_g04453 No alias component *(BET3) of TRAPP-I/II/III complex-shared... 0.02 OrthoFinder output from all 47 species
MA_10372124g0010 No alias component BET3 of TRAPP-I/II/III complex-shared components 0.01 OrthoFinder output from all 47 species
MA_10433808g0010 No alias component BET3 of TRAPP-I/II/III complex-shared components 0.01 OrthoFinder output from all 47 species
Mp3g06360.1 No alias component BET3 of TRAPP-I/II/III complex-shared components 0.01 OrthoFinder output from all 47 species
Msp_g10247 No alias component *(BET3) of TRAPP-I/II/III complex-shared... 0.01 OrthoFinder output from all 47 species
Nbi_g02702 No alias component *(BET3) of TRAPP-I/II/III complex-shared... 0.02 OrthoFinder output from all 47 species
Solyc10g006490.3.1 Solyc10g006490 component BET3 of TRAPP-I/II/III complex-shared components 0.02 OrthoFinder output from all 47 species
Zm00001e041872_P003 Zm00001e041872 component BET3 of TRAPP-I/II/III complex-shared components 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR007194 TRAPP_component 24 170
No external refs found!