LOC_Os05g41172 (Os05g0490700)


Aliases : Os05g0490700

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. SU(VAR)3-9 homolog 1 (SUVH1)


Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os05g41172
Cluster HCCA cluster: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AT1G17770 SDG17, SUVH7 SU(VAR)3-9 homolog 7 0.02 Gene family
AT2G33290 ATSUVH2, SDG3, SUVH2 SU(VAR)3-9 homolog 2 0.01 Gene family
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 0.04 Gene family
AT5G13960 SDG33, SUVH4, KYP SU(VAR)3-9 homolog 4 0.02 Gene family
Cre02.g089200 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Cre07.g352600 No alias No description available 0.01 Gene family
GSVIVT01005913001 No alias No description available 0.05 Gene family
GSVIVT01032986001 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
MA_95753g0010 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Solyc02g094520.3.1 Solyc02g094520.3 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Solyc09g090810.2.1 Solyc09g090810.2 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Solyc10g077070.2.1 Solyc10g077070.2 27.3.69 RNA.regulation of transcription.SET-domain... 0.06 Gene family
Solyc12g096990.2.1 Solyc12g096990.2 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Zm00001d005650 GRMZM2G300955 No description available 0.01 Gene family
Zm00001d011956 GRMZM2G054380 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Zm00001d019195 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.07 Gene family
Zm00001d038541 GRMZM2G117458 27.3.69 RNA.regulation of transcription.SET-domain... 0.06 Gene family
Zm00001d043135 GRMZM2G139710 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003105 SRA_YDG 215 367
IPR007728 Pre-SET_dom 396 494
IPR001214 SET_dom 513 646
No external refs found!