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  5. Pp3c5_6000V3.1

Pp3c5_6000V3.1 (Pp3c5_6000)


Aliases : Pp3c5_6000

Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG0006085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_6000V3.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT3G10090 No alias Nucleic acid-binding, OB-fold-like protein 0.05 OrthoFinder output from all 47 species
AT5G03850 No alias Nucleic acid-binding, OB-fold-like protein 0.04 OrthoFinder output from all 47 species
AT5G64140 RPS28 ribosomal protein S28 0.07 OrthoFinder output from all 47 species
Azfi_s0028.g023939 No alias component *(eS28) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Azfi_s0280.g062329 No alias component *(eS28) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.01G107900.1 Ceric.01G107900 component *(eS28) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Cre12.g510450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g44812 RPS28 component *(eS28) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
LOC_Os10g27174.1 LOC_Os10g27174 component RPS28 of SSU proteome 0.07 OrthoFinder output from all 47 species
MA_10206328g0010 RPS28 component RPS28 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.05 OrthoFinder output from all 47 species
Ppi_g07644 RPS28 component *(eS28) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Smo170205 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc02g021400.2.1 RPS28, Solyc02g021400 component RPS28 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc10g078630.2.1 RPS28, Solyc10g078630 component RPS28 of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e000507_P001 Zm00001e000507 component RPS28 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 5 64
No external refs found!