LOC_Os05g38620 (Os05g0461200)


Aliases : Os05g0461200

Description : 27.3.11 RNA.regulation of transcription.C2H2 zinc finger family Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. RESPONSIVE TO HIGH LIGHT 41 (RHL41)


Gene families : OG_01_0000035 (Gene family) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os05g38620
Cluster HCCA cluster: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037364001 No alias 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.02 Gene family
LOC_Os12g39400 Os12g0583700 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.03 Gene family
MA_101494g0010 No alias 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.02 Gene family
Zm00001d029586 GRMZM2G106026 27.3.11 RNA.regulation of transcription.C2H2 zinc finger... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!