Pp3c5_1420V3.1 (Pp3c5_1420)

Aliases : Pp3c5_1420

Description : nuclear RNA polymerase C2

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c5_1420V3.1

Target	Alias	Description	ECC score	Gene Family Method
Pp3c10_11530V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species
Pp3c15_19410V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c16_10710V3.1	Pp3c16_10710	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c16_6070V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c17_12270V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species
Pp3c21_8540V3.1	NRPC2, Pp3c21_8540	nuclear RNA polymerase C2	0.03	OrthoFinder output from all 47 species
Pp3c25_15140V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from all 47 species
Pp3c3_35890V3.1	Pp3c3_35890	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c3_37780V3.1	Pp3c3_37780	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Pp3c4_24950V3.1	Pp3c4_24950	nuclear RNA polymerase C2	0.04	OrthoFinder output from all 47 species
Pp3c5_18580V3.1	EMB1989, RPB2,...	nuclear RNA polymerase A2	0.03	OrthoFinder output from all 47 species
Pp3c9_12670V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from all 47 species
Pp3s67_170V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007645	RNA_pol_Rpb2_3	104	165

External Links

No external refs found!

Pp3c5_1420V3.1 (Pp3c5_1420)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation