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  5. Pp3c4_6610V3.1

Pp3c4_6610V3.1 (GRP2, ATGRP2,...)


Aliases : GRP2, ATGRP2, GR-RBP2, Pp3c4_6610

Description : glycine-rich RNA-binding protein 3


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_6610V3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00103290 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 2, mitochondrial... 0.06 OrthoFinder output from all 47 species
AMTR_s00013p00256900 GRP2, ATGRP2,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00114p00125610 evm_27.TU.AmTr_v1... Small RNA-binding protein 11, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT1G18630 GR-RBP6 glycine-rich RNA-binding protein 6 0.03 OrthoFinder output from all 47 species
AT2G21660 CCR2, ATGRP7,... cold, circadian rhythm, and rna binding 2 0.01 OrthoFinder output from all 47 species
AT2G37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.17 OrthoFinder output from all 47 species
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.01 OrthoFinder output from all 47 species
AT3G46020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.11 OrthoFinder output from all 47 species
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.04 OrthoFinder output from all 47 species
Adi_g043489 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056634 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g111293 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g00392 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06710 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08733 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g09046 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g01618 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20823 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24232 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g27510 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g35268 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g37833 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g44798 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g46796 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g52291 GR-RBP3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g62580 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42952 GR-RBP4, GRP4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g01126 CCR2, ATGRP7,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g22712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29612 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene18654.t1 GR-RBP3, Aspi01Gene18654 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19057.t1 Aspi01Gene19057 RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009790 CCR2, ATGRP7,... not classified & original description: CDS=136-657 0.04 OrthoFinder output from all 47 species
Azfi_s0051.g031234 No alias not classified & original description: CDS=60-764 0.04 OrthoFinder output from all 47 species
Azfi_s0062.g035257 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=192-584 0.03 OrthoFinder output from all 47 species
Azfi_s0468.g072856 GR-RBP4, GRP4 not classified & original description: CDS=1-582 0.02 OrthoFinder output from all 47 species
Cba_g01674 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09636 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g10857 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g48214 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G066000.1 Ceric.09G066000 RNA chaperone *(RZ1) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.1Z053200.1 ATRZ-1A, Ceric.1Z053200 RNA chaperone *(RZ1) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.32G066700.1 GRP2, ATGRP2,... not classified & original description: pacid=50597731... 0.02 OrthoFinder output from all 47 species
Cre02.g079400 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g392350 GRP2, ATGRP2, GR-RBP2 Glycine-rich RNA-binding protein 2, mitochondrial... 0.01 OrthoFinder output from all 47 species
Dac_g02153 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09825 GR-RBP4, GRP4 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g10484 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g33383 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g00165 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g00500 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g27810 GR-RBP4, GRP4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g40103 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g45667 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g04232 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g14326 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g21349 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007865001 GR-RBP3 RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
GSVIVT01014553001 No alias RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
GSVIVT01021024001 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Gb_20856 No alias RNA chaperone (RZ1|GR-RBP) 0.01 OrthoFinder output from all 47 species
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.01 OrthoFinder output from all 47 species
Len_g03058 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g07508 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g11354 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g21305 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g02645 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g05878 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25551 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10436424g0010 ATRZ-1A RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.01 OrthoFinder output from all 47 species
MA_77292g0010 No alias RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species
Mp1g21200.1 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.01 OrthoFinder output from all 47 species
Mp2g24130.1 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Msp_g06624 GR-RBP3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g12851 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g29443 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46058 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46171 CCR1, GR-RBP8,... RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07678 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g31219 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g32937 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42936 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43423 CCR1, GR-RBP8,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g03416 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04562 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g05753 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05754 CCR2, ATGRP7,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g07983 GR-RBP4, GRP4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09294 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12375 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14490 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19209 CCR1, GR-RBP8,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g29739 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g32725 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_23410V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.02 OrthoFinder output from all 47 species
Pp3c7_3360V3.1 CCR1, GR-RBP8,... cold, circadian rhythm, and RNA binding 1 0.01 OrthoFinder output from all 47 species
Ppi_g21521 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g23364 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g25732 ATRZ-1A not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g50550 GR-RBP4, GRP4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g61530 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009193 No alias not classified & original description: CDS=133-507 0.01 OrthoFinder output from all 47 species
Sam_g25482 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g33002 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g48373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo140819 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Smo406315 GR-RBP4, GRP4 Glycine-rich RNA-binding protein 2, mitochondrial... 0.04 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc05g053780.4.1 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.01 OrthoFinder output from all 47 species
Solyc10g084630.2.1 Solyc10g084630 Organelle RRM domain-containing protein 2, mitochondrial... 0.01 OrthoFinder output from all 47 species
Solyc11g008210.3.1 Solyc11g008210 Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g10567 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g16011 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20439 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22222 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22379 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22687 CCR2, ATGRP7,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g33913 CP31B not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g00653 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06526 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22300 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27808 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e028481_P002 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.1 OrthoFinder output from all 47 species
Zm00001e035491_P001 GR-RBP5, Zm00001e035491 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 47 117
No external refs found!