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  5. Pp3c4_28410V3.1

Pp3c4_28410V3.1 (LHCB5, Pp3c4_28410)


Aliases : LHCB5, Pp3c4_28410

Description : light harvesting complex of photosystem II 5


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_28410V3.1

Target Alias Description ECC score Gene Family Method Actions
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.02 OrthoFinder output from all 47 species
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.02 OrthoFinder output from all 47 species
Als_g06102 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g04833 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g13734 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g17843 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g18768 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g12114 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14660 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g21318 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Cba_g08707 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dac_g29164 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.01 OrthoFinder output from all 47 species
Dac_g32133 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01030053001 LHCB2.3, LHCB2, LHCB2.4 Chlorophyll a-b binding protein 151, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41710.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
LOC_Os03g39610.1 LHCB2.2, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
LOC_Os07g37550.1 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
LOC_Os09g17740.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.01 OrthoFinder output from all 47 species
Msp_g48203 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Pnu_g19122 CAB3, AB180, LHCB1.2 component *(LHCb1/2/3) of LHC-II complex & original... 0.01 OrthoFinder output from all 47 species
Solyc08g067320.3.1 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 3A, chloroplastic... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 29 170
No external refs found!