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  5. Pp3c4_14270V3.1

Pp3c4_14270V3.1 (RUXF, Pp3c4_14270)


Aliases : RUXF, Pp3c4_14270

Description : small nuclear ribonucleoprotein F


Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_14270V3.1

Target Alias Description ECC score Gene Family Method Actions
AT4G30220 RUXF small nuclear ribonucleoprotein F 0.02 OrthoFinder output from all 47 species
Als_g63045 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Ceric.1Z177500.1 Ceric.1Z177500 component *(LSm6) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Cre03.g151750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
LOC_Os04g31950.1 LOC_Os04g31950 component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
LOC_Os11g43620.1 LOC_Os11g43620 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
MA_26016g0010 RUXF component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Mp5g02830.1 No alias component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Nbi_g30602 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Smo268399 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Spa_g48866 No alias component *(LSm6) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 73
No external refs found!