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  5. Mp7g12090.1

Mp7g12090.1


Description : endoribonuclease component DCL1 of DCL1-HYL1 miRNA biogenesis complex


Gene families : OG_01_0000221 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000221_tree ,
OG_02_0004811 (LandPlants) Phylogenetic Tree(s): OG_02_0004811_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g12090.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.04 Archaeplastida
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.02 Archaeplastida
AT4G15417 ATRTL1, RTL1 RNAse II-like 1 0.02 Archaeplastida
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.03 Archaeplastida
Gb_34257 No alias Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os04g43050.1 No alias endoribonuclease (DCL4) 0.02 Archaeplastida
LOC_Os05g18850.1 No alias ribonuclease (RTL2) 0.02 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
MA_10437243g0010 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 Archaeplastida
MA_10437243g0020 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_6956785g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
MA_9225368g0010 No alias No annotation 0.03 Archaeplastida
Pp3c2_15900V3.1 No alias dicer-like 1 0.02 Archaeplastida
Smo74321 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Solyc05g024210.1.1 No alias Ribonuclease 3-like protein 3 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.04 Archaeplastida
Solyc11g008530.3.1 No alias Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
AT1G01040 DCL1, CAF,... dicer-like 1 0.02 LandPlants
MA_10437243g0010 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003100 PAZ_dom 1350 1483
IPR001650 Helicase_C 791 908
IPR005034 Dicer_dimerisation_dom 983 1071
IPR006935 Helicase/UvrB_N 390 555
IPR000999 RNase_III_dom 1520 1673
IPR000999 RNase_III_dom 1749 1862
No external refs found!