1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp7g11720.1

Mp7g11720.1


Description : endoribonuclease (DCL3). endoribonuclease (DCL4)


Gene families : OG_01_0000221 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000221_tree ,
OG_02_0000940 (LandPlants) Phylogenetic Tree(s): OG_02_0000940_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g11720.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00015000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
AMTR_s00026p00051870 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.02 Archaeplastida
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 Archaeplastida
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.04 Archaeplastida
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.05 Archaeplastida
GSVIVT01001045001 No alias RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.03 Archaeplastida
GSVIVT01019052001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Gb_36405 No alias Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os01g68120.1 No alias endoribonuclease (DCL3) 0.02 Archaeplastida
LOC_Os04g43050.1 No alias endoribonuclease (DCL4) 0.03 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
MA_10437243g0010 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.04 Archaeplastida
MA_10437243g0020 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9225368g0010 No alias No annotation 0.01 Archaeplastida
Pp3c2_15900V3.1 No alias dicer-like 1 0.04 Archaeplastida
Smo444049 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc07g005030.4.1 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.04 Archaeplastida
Solyc10g004000.1.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.02 Archaeplastida
AMTR_s00026p00051870 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.01 LandPlants
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.03 LandPlants
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.05 LandPlants
GSVIVT01001045001 No alias RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.02 LandPlants
GSVIVT01019052001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 LandPlants
LOC_Os01g68120.1 No alias endoribonuclease (DCL3) 0.01 LandPlants
LOC_Os04g43050.1 No alias endoribonuclease (DCL4) 0.03 LandPlants
Smo444049 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.01 LandPlants
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.01 LandPlants
Solyc07g005030.4.1 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.04 LandPlants
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 44 208
IPR000999 RNase_III_dom 1246 1358
IPR000999 RNase_III_dom 1040 1170
IPR003100 PAZ_dom 870 997
IPR001650 Helicase_C 385 498
IPR005034 Dicer_dimerisation_dom 566 650
No external refs found!