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  5. Pp3c2_23491V3.1

Pp3c2_23491V3.1 (Pp3c2_23491)


Aliases : Pp3c2_23491

Description : Ribosomal protein L2 family


Gene families : OG0002194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_23491V3.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
ATCG00830 RPL2.1 ribosomal protein L2 0.02 OrthoFinder output from all 47 species
ATCG01310 RPL2.2 ribosomal protein L2 0.02 OrthoFinder output from all 47 species
Aev_g24286 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ala_g38158 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g61267 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g03784 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g04596 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.05G042700.1 RPL2.1, Ceric.05G042700 not classified & original description: pacid=50577724... 0.02 OrthoFinder output from all 47 species
Ceric.1Z164200.1 RPL2.1, Ceric.1Z164200 not classified & original description: pacid=50596959... 0.02 OrthoFinder output from all 47 species
Ceric.38G009500.1 RPL2.1, Ceric.38G009500 not classified & original description: pacid=50580350... 0.03 OrthoFinder output from all 47 species
Ceric.38G057600.1 Ceric.38G057600 not classified & original description: pacid=50579815... 0.02 OrthoFinder output from all 47 species
Cre07.g348850 RPL2.1 50S ribosomal protein L2, chloroplastic OS=Chara vulgaris 0.01 OrthoFinder output from all 47 species
MA_7814449g0010 No alias 60S ribosomal protein L2, mitochondrial OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Mp1g19370.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g39693 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g43250 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pir_g37334 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Smo137825 RPL2.1 Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Spa_g56424 RPL2 component *(uL2m) of large mitoribosomal-subunit... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 80 173
No external refs found!