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  5. Pp3c25_690V3.1

Pp3c25_690V3.1 (Pp3c25_690)


Aliases : Pp3c25_690

Description : pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein


Gene families : OG0006516 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c25_690V3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00191930 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AT1G09150 No alias pseudouridine synthase and archaeosine transglycosylase... 0.03 OrthoFinder output from all 47 species
Ala_g23029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021123.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre03.g168605 No alias Solute transport.channels.CorA family.MRS/MGT metal... 0.01 OrthoFinder output from all 47 species
Cre50.g761397 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g00236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_14181 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g21180.1 LOC_Os01g21180 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp2g00100.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g40699 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g08271 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g099890.3.1 Solyc01g099890 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e026170_P003 Zm00001e026170 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002478 PUA 93 170
IPR041366 Pre-PUA 7 88
No external refs found!