Pp3c25_15020V3.1 (Pp3c25_15020)

Aliases : Pp3c25_15020

Description : H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

Gene families : OG0006021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006021_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c25_15020V3.1
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.02	OrthoFinder output from all 47 species
Ceric.34G022300.1	Ceric.34G022300	core component *(GAR1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000310.30	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.01	OrthoFinder output from all 47 species
Cre13.g567850	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
LOC_Os11g37080.1	LOC_Os11g37080	core component Gar1 of H/ACA small nucleolar...	0.01	OrthoFinder output from all 47 species
Mp5g08210.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.03	OrthoFinder output from all 47 species
Nbi_g03949	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Ore_g21960	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011917	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.01	OrthoFinder output from all 47 species
Spa_g10623	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Zm00001e011244_P001	Zm00001e011244	core component Gar1 of H/ACA small nucleolar...	0.03	OrthoFinder output from all 47 species
Zm00001e024449_P002	Zm00001e024449	core component Gar1 of H/ACA small nucleolar...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	37	138

External Links

No external refs found!