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  5. Pp3c24_70V3.1

Pp3c24_70V3.1 (Pp3c24_70)


Aliases : Pp3c24_70

Description : RNA helicase family protein


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_70V3.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
Adi_g107993 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0580.g078305 No alias not classified & original description: CDS=60-3857 0.01 OrthoFinder output from all 47 species
Ceric.34G064900.1 Ceric.34G064900 not classified & original description: pacid=50623889... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.25 No alias RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Dcu_g42294 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
LOC_Os03g19960.1 LOC_Os03g19960 helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 58 206
IPR001650 Helicase_C 269 390
IPR007502 Helicase-assoc_dom 453 528
IPR011709 DEAD-box_helicase_OB_fold 602 678
No external refs found!