1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c24_18220V3.1

Pp3c24_18220V3.1 (Pp3c24_18220)


Aliases : Pp3c24_18220

Description : Ribosomal protein S7e family protein


Gene families : OG0001505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001505_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_18220V3.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00257730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
AMTR_s00056p00135710 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
AT1G48830 No alias Ribosomal protein S7e family protein 0.03 OrthoFinder output from all 47 species
AT3G02560 No alias Ribosomal protein S7e family protein 0.26 OrthoFinder output from all 47 species
AT5G16130 No alias Ribosomal protein S7e family protein 0.19 OrthoFinder output from all 47 species
Adi_g030311 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g051929 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g068414 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g084205 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aev_g10789 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g21941 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ala_g34320 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Ala_g36863 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Als_g24302 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g27864 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Als_g36971 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aob_g00804 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aob_g11863 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Aob_g41981 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Aop_g50244 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Aop_g68949 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Aspi01Gene13513.t2 Aspi01Gene13513 component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023989 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0164.g054279 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cba_g08926 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g45359 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g58662 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.32G072400.1 Ceric.32G072400 component *(eS7) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Ceric.35G018000.1 Ceric.35G018000 component *(eS7) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021682.9 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder output from all 47 species
Cre12.g498900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
Dac_g13336 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Dac_g31681 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g18305 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g29104 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Dcu_g35832 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g13648 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g06429 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ehy_g07360 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01008307001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
GSVIVT01031018001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Gb_33823 No alias component RPS7 of SSU proteome 0.09 OrthoFinder output from all 47 species
LOC_Os03g18570.1 LOC_Os03g18570 component RPS7 of SSU proteome 0.21 OrthoFinder output from all 47 species
LOC_Os03g18580.1 LOC_Os03g18580 component RPS7 of SSU proteome 0.22 OrthoFinder output from all 47 species
LOC_Os05g27940.1 LOC_Os05g27940 component RPS7 of SSU proteome 0.05 OrthoFinder output from all 47 species
Len_g10576 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Len_g31152 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g00395 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g31925 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g37499 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
MA_52277g0010 No alias component RPS7 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp6g08120.1 No alias component RPS7 of SSU proteome 0.26 OrthoFinder output from all 47 species
Msp_g09134 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g01754 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ore_g04569 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g57015 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g18679 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g26184 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Ppi_g46098 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g49609 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017312 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g01537 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.21 OrthoFinder output from all 47 species
Sam_g13288 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g38360 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48291 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Sam_g52973 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo148446 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
Solyc03g119360.3.1 Solyc03g119360 component RPS7 of SSU proteome 0.27 OrthoFinder output from all 47 species
Solyc06g069090.3.1 Solyc06g069090 component RPS7 of SSU proteome 0.25 OrthoFinder output from all 47 species
Spa_g16479 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Spa_g22409 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Spa_g43257 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Tin_g02457 No alias component *(eS7) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Zm00001e001349_P002 Zm00001e001349 component RPS7 of SSU proteome 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000554 Ribosomal_S7e 8 188
No external refs found!