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  5. Pp3c24_13070V3.1

Pp3c24_13070V3.1 (SIZ1, ATSIZ1, Pp3c24_13070)


Aliases : SIZ1, ATSIZ1, Pp3c24_13070

Description : DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain


Gene families : OG0002076 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_13070V3.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00108p00092680 SIZ1, ATSIZ1,... Protein degradation.peptide... 0.01 OrthoFinder output from all 47 species
Ala_g07333 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0158.g053893 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.1Z183600.1 SIZ1, ATSIZ1,... E3 SUMO ubiquitin ligase *(SIZ1) & original description:... 0.02 OrthoFinder output from all 47 species
Msp_g31450 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03928 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g12816 SIZ1, ATSIZ1 E3 SUMO ubiquiTin ligase *(SIZ1) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 195 248
IPR004181 Znf_MIZ 445 493
No external refs found!