Pp3c24_12420V3.1 (Pp3c24_12420)

Aliases : Pp3c24_12420

Description : DEAD box RNA helicase (PRH75)

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c24_12420V3.1
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
Adi_g042867	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g055950	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g09590	PRH75	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g36308	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.01	OrthoFinder output from all 47 species
Aspi01Gene22621.t1	Aspi01Gene22621	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_09373	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.01	OrthoFinder output from all 47 species
Pp3c10_20760V3.1	Pp3c10_20760	DEAD box RNA helicase (PRH75)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012562	GUCT	84	165

External Links

No external refs found!