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  5. Pp3c21_14500V3.1

Pp3c21_14500V3.1 (emb1345, Pp3c21_14500)


Aliases : emb1345, Pp3c21_14500

Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0005298 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c21_14500V3.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000498.11 No alias Coenzyme metabolism.iron-sulfur cluster assembly... 0.01 OrthoFinder output from all 47 species
Spa_g08336 emb1345 assembly factor CIA1 of cytosolic CIA system transfer... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 322 356
IPR001680 WD40_repeat 218 249
IPR001680 WD40_repeat 75 109
IPR001680 WD40_repeat 21 58
IPR001680 WD40_repeat 266 303
IPR001680 WD40_repeat 119 153
IPR001680 WD40_repeat 162 198
No external refs found!