Pp3c21_10320V3.1 (BUM1, SHL, STM, WAM,...)

Aliases : BUM1, SHL, STM, WAM, WAM1, BUM, Pp3c21_10320

Description : KNOTTED-like from Arabidopsis thaliana 2

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c21_10320V3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00169620	KNAT6, KNAT6L,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.02	OrthoFinder output from all 47 species
AT4G32040	KNAT5	KNOTTED1-like homeobox gene 5	0.02	OrthoFinder output from all 47 species
AT5G25220	KNAT3	KNOTTED1-like homeobox gene 3	0.01	OrthoFinder output from all 47 species
Adi_g048010	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g060986	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Als_g02808	No alias	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15588	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Als_g16044	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g17223	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g31169	KNAT5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g06749	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g08817	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g70104	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000431	KNAT7, IXR11	KNOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Azfi_s0637.g080498	KNAT4	KNOX-type transcription factor & original description: CDS=1-810	0.02	OrthoFinder output from all 47 species
Cba_g03970	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.20G046300.1	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g03900	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g23862	KNAT4	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g36820	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g06109	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01030488001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01035921001	KNAT3	RNA biosynthesis.transcriptional activation.HB...	0.01	OrthoFinder output from all 47 species
Gb_00573	BUM1, SHL, STM,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os01g19694.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os03g03164.2	KNAT7, IXR11,...	transcription factor (KNOX)	0.01	OrthoFinder output from all 47 species
LOC_Os03g47016.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os03g47022.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.01	OrthoFinder output from all 47 species
LOC_Os03g51690.2	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Lfl_g06541	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g06929	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g27135	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g17670	KNAT4	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25497	KNAT4	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25530	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g35975	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g36039	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g25018	KNAT6, KNAT6L, KNAT6S	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g45770	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g62008	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g10499	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15325	KNAT4	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g16367	KNAT3	KNOX-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633	KNAT7, IXR11	not classified & original description: CDS=1-1266	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018785	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019793	KNAT4	KNOX-type transcription factor & original description: CDS=1-1188	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026749	KNAT3	not classified & original description: CDS=1-780	0.03	OrthoFinder output from all 47 species
Smo415291	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.01	OrthoFinder output from all 47 species
Solyc01g100510.4.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Solyc02g081120.4.1	BUM1, SHL, STM,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Solyc04g077210.3.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.01	OrthoFinder output from all 47 species
Solyc08g041820.3.1	KNAT3, Solyc08g041820	transcription factor (KNOX)	0.01	OrthoFinder output from all 47 species
Solyc12g010410.3.1	KNAT4, Solyc12g010410	transcription factor (KNOX)	0.01	OrthoFinder output from all 47 species
Tin_g45614	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e011538_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e017489_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e029453_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.01	OrthoFinder output from all 47 species
Zm00001e039044_P001	KNAT7, IXR11,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005541	KNOX2	296	342
IPR005540	KNOX1	245	285
IPR008422	Homeobox_KN_domain	441	480

External Links

No external refs found!

Pp3c21_10320V3.1 (BUM1, SHL, STM, WAM,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation