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  5. Pp3c1_40060V3.1

Pp3c1_40060V3.1 (emb1138, Pp3c1_40060)


Aliases : emb1138, Pp3c1_40060

Description : DEAD box RNA helicase (RH3)


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_40060V3.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.02 OrthoFinder output from all 47 species
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) 0.01 OrthoFinder output from all 47 species
Ala_g10440 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Aop_g01355 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10862 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016145 PRH75 not classified & original description: CDS=1-2178 0.01 OrthoFinder output from all 47 species
Azfi_s0104.g044766 emb1138 not classified & original description: CDS=78-2255 0.02 OrthoFinder output from all 47 species
Azfi_s0173.g055880 PRH75 not classified & original description: CDS=321-2342 0.01 OrthoFinder output from all 47 species
Cba_g18561 PRH75 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g36237 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.25 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.01 OrthoFinder output from all 47 species
LOC_Os12g41715.1 PMH2, ATRH53,... RNA helicase (PMH) 0.01 OrthoFinder output from all 47 species
MA_371902g0010 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.02 OrthoFinder output from all 47 species
Nbi_g24589 PRH75 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g32379 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07582 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750 PRH75 not classified & original description: CDS=177-2189 0.02 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.01 OrthoFinder output from all 47 species
Sam_g29659 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g035450.4.1 PRH75, Solyc06g035450 DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia... 0.02 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Spa_g06515 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.01 OrthoFinder output from all 47 species
Spa_g08414 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Tin_g39635 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e034728_P002 PRH75, Zm00001e034728 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012562 GUCT 546 643
IPR001650 Helicase_C 351 459
IPR001878 Znf_CCHC 717 733
IPR011545 DEAD/DEAH_box_helicase_dom 142 314
No external refs found!