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  5. Pp3c1_283V3.1

Pp3c1_283V3.1 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A, Pp3c1_283

Description : RNA polymerase II fifth largest subunit, C


Gene families : OG0017585 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0017585_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_283V3.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11560V3.1 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.07 OrthoFinder output from all 47 species
Pp3c15_19440V3.1 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 OrthoFinder output from all 47 species
Pp3c16_12587V3.1 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.02 OrthoFinder output from all 47 species
Pp3c2_29376V3.1 Pp3c2_29376 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c4_1940V3.1 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.02 OrthoFinder output from all 47 species
Pp3c4_21420V3.1 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 109 177
No external refs found!