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  5. Pp3c1_270V3.1

Pp3c1_270V3.1 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, Pp3c1_270

Description : RNA polymerase II large subunit


Gene families : OG0011134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_270V3.1
Cluster HCCA:
  • Edge WidthCluster_143
    		•

    Target Alias Description ECC score Gene Family Method Actions
    Pp3c14_4000V3.1 Pp3c14_4000 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
    Pp3c14_4010V3.1 Pp3c14_4010 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
    Pp3c19_15140V3.1 Pp3c19_15140 RNA polymerase II large subunit 0.02 OrthoFinder output from all 47 species
    Pp3c4_24940V3.1 Pp3c4_24940 RNA polymerase II large subunit 0.02 OrthoFinder output from all 47 species
    Pp3c5_1410V3.1 Pp3c5_1410 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
    Pp3c6_15700V3.1 Pp3c6_15700 nuclear RNA polymerase C1 0.03 OrthoFinder output from all 47 species
    Pp3c8_4620V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
    Pp3s67_110V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.02 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source
    MF GO:0003677 DNA binding IEA Interproscan
    MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
    BP GO:0006351 DNA-templated transcription IEA Interproscan
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0003774 cytoskeletal motor activity IEP HCCA
    MF GO:0003777 microtubule motor activity IEP HCCA
    BP GO:0006259 DNA metabolic process IEP HCCA
    BP GO:0006310 DNA recombination IEP HCCA
    BP GO:0006313 transposition, DNA-mediated IEP HCCA
    BP GO:0007017 microtubule-based process IEP HCCA
    BP GO:0007018 microtubule-based movement IEP HCCA
    MF GO:0008017 microtubule binding IEP HCCA
    MF GO:0008092 cytoskeletal protein binding IEP HCCA
    BP GO:0015074 DNA integration IEP HCCA
    MF GO:0015631 tubulin binding IEP HCCA
    BP GO:0032196 transposition IEP HCCA
    InterPro domains Description Start Stop
    IPR000722 RNA_pol_asu 1 55
    IPR007081 RNA_pol_Rpb1_5 228 270
    IPR007083 RNA_pol_Rpb1_4 134 221
    No external refs found!