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  5. Pp3c1_24120V3.1

Pp3c1_24120V3.1 (P40, AP40, RPSAA,...)


Aliases : P40, AP40, RPSAA, RP40, Pp3c1_24120

Description : 40s ribosomal protein SA


Gene families : OG0002043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_24120V3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244660 P40, AP40,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
AMTR_s00041p00084080 P40, AP40,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.04 OrthoFinder output from all 47 species
AT3G04770 RPSAb 40s ribosomal protein SA B 0.03 OrthoFinder output from all 47 species
Ala_g06615 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Aop_g07397 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0252.g060323 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g59153 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.10G044300.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cre10.g432800 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dac_g13313 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Dcu_g29763 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01016695001 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os07g42450.1 P40, AP40,... component RPSa of SSU proteome 0.06 OrthoFinder output from all 47 species
Len_g11730 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
MA_10436984g0020 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_112104g0010 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp2g26290.1 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Msp_g20402 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g25259 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Pir_g36849 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c14_15700V3.1 P40, AP40,... 40s ribosomal protein SA B 0.06 OrthoFinder output from all 47 species
Ppi_g10537 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Ppi_g33193 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Sam_g05957 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g08753 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g08754 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g42338 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc03g019780.4.1 P40, AP40,... component RPSa of SSU proteome 0.07 OrthoFinder output from all 47 species
Solyc06g072120.3.1 P40, AP40,... component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g04679 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g03323 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e000273_P001 P40, AP40,... component RPSa of SSU proteome 0.07 OrthoFinder output from all 47 species
Zm00001e010780_P001 P40, AP40,... component RPSa of SSU proteome 0.06 OrthoFinder output from all 47 species
Zm00001e038859_P001 P40, AP40,... component RPSa of SSU proteome 0.06 OrthoFinder output from all 47 species
Zm00001e038933_P001 P40, AP40,... component RPSa of SSU proteome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 9 102
IPR001865 Ribosomal_S2 106 173
No external refs found!