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  5. AMTR_s00059p00143240

AMTR_s00059p00143240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.127

Description : Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.SAP30 associated component


Gene families : OG_01_0001164 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001164_tree ,
OG_02_0000888 (LandPlants) Phylogenetic Tree(s): OG_02_0000888_tree ,
OG_03_0002206 (SeedPlants) Phylogenetic Tree(s): OG_03_0002206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00143240
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT1G75060 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 Archaeplastida
Cpa|evm.model.tig00020684.7 No alias No description available 0.01 Archaeplastida
GSVIVT01009650001 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
Gb_06121 No alias associated component SAP30 of histone deacetylase machineries 0.02 Archaeplastida
LOC_Os04g08450.3 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
Solyc04g079930.3.1 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
AT1G75060 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 LandPlants
GSVIVT01009650001 No alias Chromatin organisation.histone modifications.histone... 0.02 LandPlants
LOC_Os04g08450.3 No alias associated component SAP30 of histone deacetylase machineries 0.03 LandPlants
Solyc04g079930.3.1 No alias associated component SAP30 of histone deacetylase machineries 0.03 LandPlants
AT1G75060 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 SeedPlants
GSVIVT01009650001 No alias Chromatin organisation.histone modifications.histone... 0.02 SeedPlants
LOC_Os10g21460.1 No alias associated component SAP30 of histone deacetylase machineries 0.02 SeedPlants
Solyc04g079930.3.1 No alias associated component SAP30 of histone deacetylase machineries 0.02 SeedPlants
Zm00001e027006_P001 No alias associated component SAP30 of histone deacetylase machineries 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 163 216
No external refs found!