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  5. Pp3c17_19726V3.1

Pp3c17_19726V3.1 (Pp3c17_19726)


Aliases : Pp3c17_19726

Description : RNA helicase family protein


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c17_19726V3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G58050 No alias RNA helicase family protein 0.01 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Adi_g105502 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g12900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g05315 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.01 OrthoFinder output from all 47 species
Ceric.1Z227800.1 Ceric.1Z227800 not classified & original description: pacid=50639140... 0.01 OrthoFinder output from all 47 species
Ceric.1Z321000.1 Ceric.1Z321000 not classified & original description: pacid=50597147... 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.01 OrthoFinder output from all 47 species
Dac_g11272 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07134 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g29456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
LOC_Os01g02884.1 LOC_Os01g02884 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10429367g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
Msp_g36064 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g22351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20169 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g12240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20526 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo173775 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo419303 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
Spa_g47720 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g02904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 522 607
IPR001650 Helicase_C 397 458
IPR011709 DEAD-box_helicase_OB_fold 653 734
No external refs found!