LOC_Os05g05230 (Os05g0144300)


Aliases : Os05g0144300

Description : 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress. ATCHR12


Gene families : OG_01_0000140 (Gene family) Phylogenetic Tree(s): OG0000140_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os05g05230
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.07 Gene family
AT2G13370 CHR5 chromatin remodeling 5 0.11 Gene family
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.05 Gene family
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.14 Gene family
AT3G06010 ATCHR12 Homeotic gene regulator 0.05 Gene family
AT5G19310 No alias Homeotic gene regulator 0.02 Gene family
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.12 Gene family
Cpa|evm.model.tig00000983.26 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.03 Gene family
Cre03.g179300 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
Cre08.g377200 No alias No description available 0.04 Gene family
Cre09.g390000 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.04 Gene family
Cre12.g508150 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
Cre12.g537671 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.05 Gene family
Cre16.g647602 No alias No description available 0.04 Gene family
GSVIVT01012117001 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.1 Gene family
GSVIVT01017791001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.09 Gene family
GSVIVT01017820001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.04 Gene family
GSVIVT01017921001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.06 Gene family
GSVIVT01025216001 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
GSVIVT01035901001 No alias No description available 0.04 Gene family
GSVIVT01037235001 No alias 28.1 DNA.synthesis/chromatin structure chromatin... 0.09 Gene family
LOC_Os05g05780 Os05g0150300 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
MA_102992g0020 No alias 27.3.44 RNA.regulation of transcription.Chromatin... 0.02 Gene family
MA_8926002g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
Smo102849 PACid_15409196 No description available 0.04 Gene family
Smo155996 PACid_15410236 No description available 0.05 Gene family
Smo177985 PACid_15407971 No description available 0.08 Gene family
Smo440203 PACid_15403255 27.3.44 RNA.regulation of transcription.Chromatin... 0.05 Gene family
Smo440815 PACid_15407851 28.1 DNA.synthesis/chromatin structure chromatin... 0.08 Gene family
Solyc01g067390.3.1 Solyc01g067390.3 28.1 DNA.synthesis/chromatin structure chromatin... 0.09 Gene family
Solyc01g079690.3.1 Solyc01g079690.3 27.3.44 RNA.regulation of transcription.Chromatin... 0.06 Gene family
Solyc02g068560.3.1 Solyc02g068560.3 28.1 DNA.synthesis/chromatin structure chromatin... 0.11 Gene family
Solyc06g010200.3.1 Solyc06g010200.3 27.3.44 RNA.regulation of transcription.Chromatin... 0.1 Gene family
Solyc06g065730.3.1 Solyc06g065730.3 No description available 0.06 Gene family
Solyc08g029130.3.1 Solyc08g029130.3 No description available 0.1 Gene family
Solyc11g062010.2.1 Solyc11g062010.2 28.1 DNA.synthesis/chromatin structure Encodes a... 0.12 Gene family
Solyc12g099910.2.1 Solyc12g099910.2 28.1 DNA.synthesis/chromatin structure chromatin... 0.05 Gene family
Zm00001d006428 GRMZM2G181158,... 28.1 DNA.synthesis/chromatin structure chromatin... 0.16 Gene family
Zm00001d006798 GRMZM2G102625 27.3.44 RNA.regulation of transcription.Chromatin... 0.04 Gene family
Zm00001d007089 GRMZM2G141258 28.1 DNA.synthesis/chromatin structure chromatin... 0.09 Gene family
Zm00001d021541 GRMZM2G316191 28.1 DNA.synthesis/chromatin structure chromatin... 0.17 Gene family
Zm00001d022405 GRMZM2G010342 28.1 DNA.synthesis/chromatin structure chromatin... 0.07 Gene family
Zm00001d024816 GRMZM2G097289,... 27.3.44 RNA.regulation of transcription.Chromatin... 0.1 Gene family
Zm00001d045109 GRMZM2G409865,... No description available 0.13 Gene family
Zm00001d045635 GRMZM2G472428 27.3.44 RNA.regulation of transcription.Chromatin... 0.13 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 748 861
IPR029295 SnAC 941 1014
IPR000330 SNF2_N 457 729
No external refs found!