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  5. Pp3c16_12410V3.1

Pp3c16_12410V3.1 (FIB2, ATFIB2, Pp3c16_12410)


Aliases : FIB2, ATFIB2, Pp3c16_12410

Description : fibrillarin 2


Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_12410V3.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.01 OrthoFinder output from all 47 species
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.02 OrthoFinder output from all 47 species
Ceric.02G070500.1 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001049.16 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Cre02.g077300 FIB2, ATFIB2 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01028887001 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.01 OrthoFinder output from all 47 species
LOC_Os05g08360.1 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 OrthoFinder output from all 47 species
MA_124463g0010 FIB2, ATFIB2 methyltransferase component Nop1/fibrillarin of snoRNP... 0.01 OrthoFinder output from all 47 species
Mp2g12880.1 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 OrthoFinder output from all 47 species
Nbi_g41181 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.02 OrthoFinder output from all 47 species
Sam_g13274 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.01 OrthoFinder output from all 47 species
Solyc03g025270.3.1 FIB2, ATFIB2,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 OrthoFinder output from all 47 species
Zm00001e023572_P001 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000692 Fibrillarin 75 302
No external refs found!