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  5. Pp3c16_1080V3.1

Pp3c16_1080V3.1 (Pp3c16_1080)


Aliases : Pp3c16_1080

Description : GTP-binding family protein


Gene families : OG0005439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_1080V3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G07050 No alias GTP-binding family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012682 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.03 OrthoFinder output from all 47 species
Cre12.g533050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os01g27730.1 LOC_Os01g27730 NUG1/NSN1 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.01 OrthoFinder output from all 47 species
Solyc09g061430.3.1 Solyc09g061430 NUG1/NSN1 LSU processome regulatory GTPase 0.01 OrthoFinder output from all 47 species
Zm00001e004937_P002 Zm00001e004937 NUG1/NSN1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e012467_P001 Zm00001e012467 NUG1/NSN1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 268 328
No external refs found!