LOC_Os05g02150 (Os05g0112200)

Aliases : Os05g0112200

Description : 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots. OBF-binding protein 3 (OBP3)

Gene families : OG_01_0000024 (Gene family) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): LOC_Os05g02150
Cluster	HCCA cluster: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.02	Gene family
AT3G45610	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Gene family
AT4G38000	DOF4.7	DNA binding with one finger 4.7	0.02	Gene family
AT5G60850	OBP4	OBF binding protein 4	0.02	Gene family
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Gene family
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.07	Gene family
GSVIVT01002242001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
GSVIVT01005057001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
GSVIVT01007758001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
GSVIVT01016538001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
GSVIVT01019619001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
GSVIVT01021086001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
GSVIVT01024986001	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
LOC_Os02g47810	Os02g0707200	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
LOC_Os02g49440	Os02g0726300	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
LOC_Os03g42200	Os03g0619001,...	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
MA_16692g0010	No alias	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
Solyc02g076850.2.1	Solyc02g076850.2	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
Solyc02g077950.2.1	Solyc02g077950.2	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
Solyc02g077960.2.1	Solyc02g077960.2	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
Solyc02g090220.3.1	Solyc02g090220.3	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.06	Gene family
Solyc02g090310.1.1	Solyc02g090310.1	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
Solyc06g071480.3.1	Solyc06g071480.3	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
Solyc06g076030.3.1	Solyc06g076030.3	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
Zm00001d012963	GRMZM2G144172,...	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.03	Gene family
Zm00001d013724	GRMZM2G061292	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
Zm00001d017788	GRMZM2G140694	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
Zm00001d021591	GRMZM2G134545,...	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.04	Gene family
Zm00001d030727	GRMZM2G123900	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.1	Gene family
Zm00001d033325	GRMZM2G045678	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.08	Gene family
Zm00001d034163	GRMZM2G108865	16.5.1.2.3 secondary...	0.07	Gene family
Zm00001d035651	GRMZM2G179069	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family
Zm00001d041549	GRMZM2G176063	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.07	Gene family
Zm00001d043904	GRMZM2G327189	27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	102	156

External Links

No external refs found!

LOC_Os05g02150 (Os05g0112200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation