Pp3c14_12310V3.1 (Pp3c14_12310)

Aliases : Pp3c14_12310

Description : RNA helicase family protein

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c14_12310V3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AT5G04895	No alias	DEA(D/H)-box RNA helicase family protein	0.01	OrthoFinder output from all 47 species
Aev_g01587	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g04976	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g13444	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Smo177444	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	329	482
IPR001650	Helicase_C	588	716
IPR007502	Helicase-assoc_dom	780	868
IPR011709	DEAD-box_helicase_OB_fold	938	1019

External Links

No external refs found!