Pp3c13_15770V3.1 (Pp3c13_15770)

Aliases : Pp3c13_15770

Description : PIF1 helicase

Gene families : OG0000992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000992_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c13_15770V3.1
Cluster	HCCA: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene42994.t1	Aspi01Gene42994	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene63366.t1	Aspi01Gene63366	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g07990.1	LOC_Os01g07990	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ore_g11983	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g09969	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c10_2400V3.1	Pp3c10_2400	No annotation	0.06	OrthoFinder output from all 47 species
Pp3c15_9490V3.1	Pp3c15_9490	PIF1 helicase	0.03	OrthoFinder output from all 47 species
Pp3c17_17890V3.1	Pp3c17_17890	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c18_20670V3.1	Pp3c18_20670	No annotation	0.04	OrthoFinder output from all 47 species
Pp3c1_35290V3.1	Pp3c1_35290	No annotation	0.04	OrthoFinder output from all 47 species
Pp3c22_19090V3.1	Pp3c22_19090	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c23_11220V3.1	Pp3c23_11220	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c23_8030V3.1	Pp3c23_8030	PIF1 helicase	0.04	OrthoFinder output from all 47 species
Pp3c3_20060V3.1	Pp3c3_20060	No annotation	0.06	OrthoFinder output from all 47 species
Pp3c7_6800V3.1	Pp3c7_6800	No annotation	0.05	OrthoFinder output from all 47 species
Pp3s62_90V3.1	Pp3s62_90	PIF1 helicase	0.02	OrthoFinder output from all 47 species
Spa_g37926	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g16137	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g46053	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	2	155

External Links

No external refs found!

Pp3c13_15770V3.1 (Pp3c13_15770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation