AMTR_s00059p00067090 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.43

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component


Gene families : OG_01_0004474 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004474_tree ,
OG_02_0005029 (LandPlants) Phylogenetic Tree(s): OG_02_0005029_tree ,
OG_03_0007211 (SeedPlants) Phylogenetic Tree(s): OG_03_0007211_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00067090
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001333.27 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre16.g656250 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
LOC_Os10g02630.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 Archaeplastida
Pp3c7_6390V3.1 No alias U1 small nuclear ribonucleoprotein-70K 0.02 Archaeplastida
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.06 Archaeplastida
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 Archaeplastida
LOC_Os10g02630.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 LandPlants
Pp3c7_6390V3.1 No alias U1 small nuclear ribonucleoprotein-70K 0.01 LandPlants
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.05 LandPlants
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 LandPlants
LOC_Os10g02630.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 SeedPlants
Solyc02g085420.4.1 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 SeedPlants
Zm00001e012949_P002 No alias component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 140 209
IPR022023 U1snRNP70_N 40 130
No external refs found!